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GrainGenes Marker Report: k02397

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Locus	k02397
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 38.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags1h24
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = TGCTCAGCCARCGCCAAGATC Parent 1 SNP sequence = TGCTCAGCCAGCGCCAAGATC Parent 2 SNP sequence = TGCTCAGCCAACGCCAAGATC
Probe for Locus	bags1h24
Locus	k02397
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = HUELLENLOS-like protein [Oryza sativa]
Type	PCR
PCR primers	Left 5' - AAGGTGGCGATGAAGAAGAA Right 5' - CATGTGCATCAATTTTTGGC
Sequence	AV921226
PCR size	412