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GrainGenes Marker Report: k02413

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Locus	k02413
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 121.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20c12
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/T SNP structure (UNICODE) = TATCAGACTTYTAATTTCTAC Parent 1 SNP sequence = TATCAGACTTCTAATTTCTAC Parent 2 SNP sequence = TATCAGACTTTTAATTTCTAC
Probe for Locus	bags20c12
Locus	k02413
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative Eukaryotic translation initiation factor 3 subunit 8 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGACACCGAAAACCATTTGA Right 5' - TCAGGGAGCTGACGAAGACT
Sequence	AV918184
PCR size	356