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GrainGenes Marker Report: k02428

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Locus	k02428
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 178.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags20h05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = GGGGGTTAGARTAGAAGTAAT Parent 1 SNP sequence = GGGGGTTAGAGTAGAAGTAAT Parent 2 SNP sequence = GGGGGTTAGAATAGAAGTAAT
Probe for Locus	bags20h05
Locus	k02428
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative auxin independent growth-related protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CAGTGCTCTTCACTCTCCCC Right 5' - CTGAAGGCCACTACCAGAGC
Sequence	AV833992
PCR size	375