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GrainGenes Marker Report: k02542

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Locus	k02542
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags23c03
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/T SNP structure (UNICODE) = GTATACAACTWTAAGCACGCA Parent 1 SNP sequence = GTATACAACTATAAGCACGCA Parent 2 SNP sequence = GTATACAACTTTAAGCACGCA
Probe for Locus	bags23c03
Locus	k02542
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative elicitor inducible beta-1,3-glucanase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTAATGACCGTGCCAGGATT Right 5' - CCTGTGGATCCTCTCTGCTC
Sequence	AV921349
PCR size	429