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GrainGenes Marker Report: k03406

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Locus	k03406
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 265.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bags7p06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = GTCCTATCCARCCAGATAAAA Parent 1 SNP sequence = GTCCTATCCAGCCAGATAAAA Parent 2 SNP sequence = GTCCTATCCAACCAGATAAAA
Probe for Locus	bags7p06
Locus	k03406
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = flap endonuclease-1b [Oryza sativa (japonica cultivar-group)] dbj BAC98428.1 flap endonuclease-1b [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTCTCATAACCAGGAAGCCG Right 5' - CCGTGTCCCTGCTCTAGTGT
Sequence	AV834239
PCR size	433