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GrainGenes Marker Report: k04117

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Locus	k04117
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 102.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah36c06
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = CAAGACGCCCRGTCCGGCCAG Parent 1 SNP sequence = CAAGACGCCCGGTCCGGCCAG Parent 2 SNP sequence = CAAGACGCCCAGTCCGGCCAG
Probe for Locus	bah36c06
Locus	k04117
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = DEAD/DEAH box helicase family protein / pentatricopeptide (PPR) repeat-containing protein [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - AGTTGCATTCTTGCCCAAAC Right 5' - CATCGGCCTCCAAGTACCTA
Sequence	AV946797
PCR size	401