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GrainGenes Marker Report: k04176

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Locus	k04176
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 94.9
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bah45f13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = T/C SNP structure (UNICODE) = TGCGATTTTAYATAACGAAAT Parent 1 SNP sequence = TGCGATTTTATATAACGAAAT Parent 2 SNP sequence = TGCGATTTTACATAACGAAAT
Probe for Locus	bah45f13
Locus	k04176
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = hypothetical protein~similar to Arabidopsis thaliana chromosome 3, At3g23610 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - ACAGATGTGCTGCAATGGAA Right 5' - TGATGTGGAGAGCATGGAAG
Sequence	BJ483468
PCR size	373