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GrainGenes Marker Report: k04790

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Locus	k04790
Type	SNP
Chromosome	4H
Map	Hv-HNxH602-4H 106
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd11d18
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = AGCTACAAAARCAATGATGGA Parent 1 SNP sequence = AGCTACAAAAGCAATGATGGA Parent 2 SNP sequence = AGCTACAAAAACAATGATGGA
Probe for Locus	basd11d18
Locus	k04790
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Chorismate synthase, chloroplast precursor (5-enolpyruvylshikimate-3-phosphate phospholyase)
Type	PCR
PCR primers	Left 5' - GATTTTGCACAGTTCATGCG Right 5' - GCCACTGCTTGAGAGTGATG
Sequence	BJ546485
PCR size	419