Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k04792

[Submit comment/correction]

Locus	k04792
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 75.2
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd11l17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/G SNP structure (UNICODE) = TGAACTTGGCRTAGATGTCAG Parent 1 SNP sequence = TGAACTTGGCATAGATGTCAG Parent 2 SNP sequence = TGAACTTGGCGTAGATGTCAG
Probe for Locus	basd11l17
Locus	k04792
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] pir T52441 hypothetical protein ZW18 [imported] - Arabidopsis thaliana
Type	PCR
PCR primers	Left 5' - TGTTTTACATGGGCTGGTCA Right 5' - ATGAATGAGTTCAGGGGTGG
Sequence	AV929299
PCR size	414