Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k04806

[Submit comment/correction]

Locus	k04806
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 78.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd15e10
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/T SNP structure (UNICODE) = TGAGCACAACYTGGCATGCCC Parent 1 SNP sequence = TGAGCACAACCTGGCATGCCC Parent 2 SNP sequence = TGAGCACAACTTGGCATGCCC
Probe for Locus	basd15e10
Locus	k04806
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = Chlorophyll a-b binding protein 3C, chloroplast precursor (LHCII type I CAB-3C) (LHCP)
Type	PCR
PCR primers	Left 5' - TTCATTCTACATCGAGGCGA Right 5' - TGACGTCACGGGTGTATCC
Sequence	BQ661796
PCR size	446