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GrainGenes Marker Report: k04939

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Locus	k04939
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 167.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd18m04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = GGCGACGCCGRAACCAACGAA Parent 1 SNP sequence = GGCGACGCCGGAACCAACGAA Parent 2 SNP sequence = GGCGACGCCGAAACCAACGAA
Probe for Locus	basd18m04
Locus	k04939
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0038O10.13 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CCCACCTAAAATCCTAGCCC Right 5' - GGTCTTCCTGGTGGTGGTAA
Sequence	AV931153
PCR size	391