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GrainGenes Marker Report: k05172

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Locus	k05172
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 18.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd26l20
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/G SNP structure (UNICODE) = CCTCCACGACSGCCCCGGGCT Parent 1 SNP sequence = CCTCCACGACCGCCCCGGGCT Parent 2 SNP sequence = CCTCCACGACGGCCCCGGGCT
Probe for Locus	basd26l20
Locus	k05172
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0086P08.14 [Oryza sativa (japonica cultivar-group)] dbj BAB17204.1 OSJNBa0086P08.14 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTTCGTACTCTGCCCTGGAG Right 5' - CCTCGACTACGAACAGGAGC
Sequence	AV931921
PCR size	428