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GrainGenes Marker Report: k05343

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Locus	k05343
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 116.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	basd3h13
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/C SNP structure (UNICODE) = TAAAGGCATCMTTTAGCTAAT Parent 1 SNP sequence = TAAAGGCATCATTTAGCTAAT Parent 2 SNP sequence = TAAAGGCATCCTTTAGCTAAT
Probe for Locus	basd3h13
Locus	k05343
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = senescence-associated putative protein-like [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TGAAGGCAAACTGGAGCTTTA Right 5' - CCGTGTTTTCAAGACCTCGT
Sequence	AV836800
PCR size	455