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GrainGenes Marker Report: k06505

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Locus	k06505
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 80.7
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK35N11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/G SNP structure (UNICODE) = CCCATGACCGRTACGACTGGG Parent 1 SNP sequence = CCCATGACCGATACGACTGGG Parent 2 SNP sequence = CCCATGACCGGTACGACTGGG
Probe for Locus	BaAK35N11
Locus	k06505
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative proton pump interactor [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCTGCCAAGAGCAGAGAGTG Right 5' - TCAAACTGGACGTGTTCGAC
Sequence	BJ545449
PCR size	353