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GrainGenes Marker Report: k06620

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Locus	k06620
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 104.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaAK21A17
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/G SNP structure (UNICODE) = TTTTTAACACRATTTTTAACA Parent 1 SNP sequence = TTTTTAACACAATTTTTAACA Parent 2 SNP sequence = TTTTTAACACGATTTTTAACA
Probe for Locus	BaAK21A17
Locus	k06620
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0415C01.15 [Oryza sativa (japonica cultivar-group)] dbj BAB89037.1 P0415C01.15 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - GGATGCGGCTACAATGAAAT Right 5' - CGCAGTCAAGTTCTTCACCA
Sequence	BJ448181
PCR size	281