GrainGenes Marker Report: k07339
Locus
k07339
Type
CAPS
Chromosome
3H
Map
Hv-HNxH602-3H 217.7
[ Show Nearby Loci ]
Map Data
Barley, HN x H602, Sato2009
Species
Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe
BaAL13N01
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark
Restriction enzyme used for CAPS analysis = HhaI SNP = -/G SNP structure (UNICODE) = TCTTGGTCGC-/GCCCGGGGCGA Parent 1 SNP sequence = TCTTGGTCGC-CCCGGGGCGA Parent 2 SNP sequence = TCTTGGTCGCGCCCGGGGCGA
Probe for Locus
BaAL13N01
Locus
k07339
Reference
Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks
Best BLAST Hit = putative short chain alcohol dehydrogenase [Oryza sativa (japonica cultivar-group)]
Type
PCR
PCR primers
Left 5' - AGGCAGCAAGAAACACTGCT
Right 5' - ATCTCCAAGGACACCGAGG
Sequence
BJ474443
PCR size
494
GrainGenes Marker Report: k07339
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