Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Marker Report: k07542

[Submit comment/correction]

Locus	k07542
Type	SNP
Chromosome	7H
Map	Hv-HNxH602-7H 232.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaGS12F09
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = T/C SNP structure (UNICODE) = CCACTCGTAGYAGCGTGTGTT Parent 1 SNP sequence = CCACTCGTAGTAGCGTGTGTT Parent 2 SNP sequence = CCACTCGTAGCAGCGTGTGTT
Probe for Locus	BaGS12F09
Locus	k07542
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative ribosomal RNA apurinic site specific lyase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CTCAAAAACCCGTGAAGCTC Right 5' - AAGGGGCACTTTCTTGGTGT
Sequence	AV921684
PCR size	395