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GrainGenes Marker Report: k08376

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Locus	k08376
Type	SNP
Chromosome	1H
Map	Hv-HNxH602-1H 175.3
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH35B05
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = A/G SNP structure (UNICODE) = GCACGGACCARCATCAAAGGT Parent 1 SNP sequence = GCACGGACCAACATCAAAGGT Parent 2 SNP sequence = GCACGGACCAGCATCAAAGGT
Probe for Locus	BaH35B05
Locus	k08376
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative copia-type pol polyprotein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCCGGAGAAAGCTAACTGGA Right 5' - GCAGCGTCTGAGAAGTTGTG
PCR size	153