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GrainGenes Marker Report: k08977

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Locus	k08977
Type	SNP
Chromosome	6H
Map	Hv-HNxH602-6H 125.6
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH52B11
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = -/A SNP structure (UNICODE) = TCTATGGAAA-/ATACATGGAAG Parent 1 SNP sequence = TCTATGGAAA-TACATGGAAG Parent 2 SNP sequence = TCTATGGAAAATACATGGAAG
Probe for Locus	BaH52B11
Locus	k08977
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = aspartyl protease family protein [Arabidopsis thaliana] gb AAF69716.1 F27J15.15 [Arabidopsis thaliana]
Type	PCR
PCR primers	Left 5' - ATGCTAAGCAGAGAGCCGAG Right 5' - CTGTACGGGAACCTCGACAT
Sequence	AV917948
PCR size	382