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GrainGenes Marker Report: k09226

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Locus	k09226
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 88.5
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaH53P15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/T SNP structure (UNICODE) = ATCTGACAACYTCAAAATCGT Parent 1 SNP sequence = ATCTGACAACCTCAAAATCGT Parent 2 SNP sequence = ATCTGACAACTTCAAAATCGT
Probe for Locus	BaH53P15
Locus	k09226
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = putative aspartate transaminase [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCCAGCGCTTATTCCATCTC Right 5' - TCTACAGGTTGCTGCACAGG
Sequence	BJ485124
PCR size	415