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GrainGenes Marker Report: k09490

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Locus	k09490
Type	SNP
Chromosome	3H
Map	Hv-HNxH602-3H 100.1
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD23A04
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = T/C SNP structure (UNICODE) = GATGATAACTYCATTTGCGCA Parent 1 SNP sequence = GATGATAACTTCATTTGCGCA Parent 2 SNP sequence = GATGATAACTCCATTTGCGCA
Probe for Locus	BaSD23A04
Locus	k09490
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = P0665D10.11 [Oryza sativa (japonica cultivar-group)] dbj BAB16486.1 P0665D10.11 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - TCTTAGCCTTCTGAGCCCAA Right 5' - AGCCCAGGATGTAGCTGAGA
Sequence	AV931499
PCR size	416