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GrainGenes Marker Report: k09517

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Locus	k09517
Type	SNP
Chromosome	2H
Map	Hv-HNxH602-2H 159.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	BaSD20J15
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/T SNP structure (UNICODE) = ACTATGTATGYACAGACGCGC Parent 1 SNP sequence = ACTATGTATGCACAGACGCGC Parent 2 SNP sequence = ACTATGTATGTACAGACGCGC
Probe for Locus	BaSD20J15
Locus	k09517
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = OSJNBa0014K14.6 [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - AGGAAGCACGATGATTTTGG Right 5' - AGGACAACGTCACCATACCC
Sequence	AV929011
PCR size	387