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GrainGenes Marker Report: k09974

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Locus	k09974
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 206.8
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast14H0416
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = C/T SNP structure (UNICODE) = CATCATGATAYATGTCTTGGT Parent 1 SNP sequence = CATCATGATACATGTCTTGGT Parent 2 SNP sequence = CATCATGATATATGTCTTGGT
Probe for Locus	bast14H0416
Locus	k09974
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = expressed protein [Arabidopsis thaliana] sp Q9SD88 U139_ARATH Hypothetical UPF0139 protein At5g07960
Type	PCR
PCR primers	Left 5' - CAATTCCGGCAGAGGAATAA Right 5' - GTTGGCCTAACGAAGAACCA
Sequence	AJ473230
PCR size	306