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GrainGenes Marker Report: k10390

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Locus	k10390
Type	SNP
Chromosome	5H
Map	Hv-HNxH602-5H 69.4
	[ Show Nearby Loci ]
Map Data	Barley, HN x H602, Sato2009
Species	Hordeum vulgare Hordeum vulgare subsp. spontaneum
Probe	bast52H1216
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
Remark	SNP = G/A SNP structure (UNICODE) = CAACAGTTGTRACAAAAGAGA Parent 1 SNP sequence = CAACAGTTGTGACAAAAGAGA Parent 2 SNP sequence = CAACAGTTGTAACAAAAGAGA
Probe for Locus	bast52H1216
Locus	k10390
Reference	Sato K et al. (2009) A high-density transcript linkage map of barley derived from a single population. Heredity 103:110-117.
General Remarks	Best BLAST Hit = transcription factor rough sheath 2 like protein [Oryza sativa (japonica cultivar-group)]
Type	PCR
PCR primers	Left 5' - CGGCGATGAATCAAAAAGTT Right 5' - GGCAGTCCATCGACTTCTTC
Sequence	BQ665096
PCR size	168