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GrainGenes QTL Report: QUt.spa-6B.2

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QTL	QUt.spa-6B.2
Trait Affected	Reaction to smut
Synonym	QTL1476_6B-Kumar_et_al._2018 QTL1477_6B-Kumar_et_al._2018 QTL1475_6B-Kumar_et_al._2018
Ontology	CO_321:0000921 Planteome wheat loose smut incidence trait
Trait Study	Smut resistance, Blackbird x Strongfield, Kumar2018
Chromosome	6B
Positive Significant Marker	IWB7702 IWB60190 barc24 Tdurum_contig76997_244 IWB70152
LOD Peak Location	barc24 Tdurum_contig76997_244
Species	Triticum turgidum ssp. durum Triticum turgidum ssp. carthlicum
Parent	Blackbird Strongfield
Comment	Curator Note (3/2019)The name 'spa' was from the paper's QTL name; but without definition of its origen. There was no QUt.spa-6B.1, but the 6B.2 version was used to maintain consistency with the original publication. QUt.spa-6B.2 has three synonyms on the durum assembly with overlapping positions in the assembly, but was a single locus in the paper. These QTL were collapsed into one locus with phenotype R^2 values from 39.2-74.9 Curator Note (VCB, 04/2019). QTL names and markers associated with this QTL are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate this QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics.
Reference	Kumar S et al. (2017) High-density genetic mapping of a major QTL for resistance to multiple races of loose smut in a tetraploid wheat cross PLoS One 13:e019226.

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