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GrainGenes QTL Report: QSnb.ndsu-5B

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QTL	QSnb.ndsu-5B
Trait Affected	Reaction to Stagonospora glume blotch
Synonym	QTL1373_5B-Gonzalez-Hernandez_et_al._2009
Ontology	TO:0000439 Planteome CO_321:0000717 Planteome wheat septoria nodorum blotch severity trait
Trait Study	Stagonospora nodorum blotch, Langdon 5B disomics, Gonzalez-Hernandez2009
Chromosome	5B
Positive Significant Marker	XSYI wmc415-5B bcd9-5B fbb237-5B
LOD Peak Location	XSYI
Species	Triticum turgidum ssp. dicoccoides Triticum turgidum ssp durum
Parent	LANGDON LDN(Dic-5B) LDN 5D(5B)
Comment	Curator Note (VCB, 04/2019). QTL names and markers associated with this QTL are from two sources, the primary reference and information embedded in the QTL track of the GrainGenes genome browser for the Triticum turgidum ssp. durum cv. Svevo (RefSeq 1.0) assembly. QTL were initially curated by members of the International Durum Genome Sequencing Consortium who assigned the encoded QTL name and information on the assembly including computationally-aligned significant markers (SNPs, DArTs, SSRs). To curate this QTL for GrainGenes, the primary reference was reviewed, the original QTL name was synonymized, and original markers were added to the significant marker list shown on the QTL report page. GrainGenes users are advised to review the qtl track in the Svevo assembly for additional position information and confidence intervals, as well as the primary reference for additional statistics. Curator Note (VCB, 04/2019). Markers reported with this QTL on the durum assembly are XSYI and wmc415. While included in this record, no marker information for XSYI could be found in the paper, or online, and Figure 2 in the paper shows wmc415 to map about 5 cm from the QTL. Authors claim that the QTL resides between bcd9 and fbb237
Reference	Gonzalez-Hernandez JL et al. (2009) A quantitative trait locus on chromosome 5B controls resistance of Triticum turgidum (L.) var. diccocoides to Stagonospora nodorum blotch. Euphytica 166:199-206.

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