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GrainGenes Sequence Report: CD373490

Sequence	CD373490
Contig	Ta.9408.1.S1_at NSFT03P2_Contig16815
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC278189
wEST map position	CD373490
NCBI UniGene	Ta.54647
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001049846.1 Os03g0298800 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	4BL
Clone Library	CS wheat cold-stressed seedling cDNA library
Tissue	Seedling
Developmental Stage	Five-day old seedling
Data Source	genbank Release 136, Jun 15 2003 genbank Updated Nov 2006
Title	WHE0360_F07_K14ZT CS wheat cold-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0360_F07_K14, mRNA sequence.
Strain	lab_host E. coli SOLR
Clone	WHE0360_F07_K14
Probe	WHE0360_F07_K14
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20.; Seq primer: T7 primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA	tttttttttttttttttttttttttttttttcaccagagccaaacctgat ttaaagtagcacatactttttaacttcttaaacaacaagcaagtcacttc caaaaaatacagggttagaaagccagcacaagcacagcacagcagcttga aagcttaggggggaaaatcttacagttacagatttcttttggccggttcc gaaatcacagggatcgttttcactttttggcgtaagaaatggccattggg ttctctgggctgatcttgaaaccctggagggcttccattgcaaccaggga cgggttcccgtcctcgtaccccaaaaaagcaatgcctggcttggcttcga tcatccgcacctcccggaaaccagggtattgctggaacaggatctggagc atcatgcccgtggtctggtccggcatgttctggaggaagaggatgttgtt cggcggagcagctggctcttgcgggggcttggcaaaa

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