GrainGenes Sequence Report: CD452918

[Submit comment/correction]

Sequence

CD452918

Contig

Ta.7509.1.S1_at

NSFT03P2_Contig17451

External Databases

TIGR Gene Index

wEST map position

CD452918

NCBI UniGene

Ta.54911

DB Remark

Locus Source: Triticum aestivum (bread wheat)

UniGene title 'Transcribed locus, strongly similar to NP_172221.1 AtRABA2b (Arabidopsis Rab GTPase homolog A2b); GTP binding [Arabidopsis thaliana]'

Keyword

EST

Species

Triticum aestivum

Cultivar

Chinese Spring

Chromosome

3AL

5AL

Clone Library

CS wheat etiolated seedling root normalized cDNA library

Tissue

Root

Developmental Stage

Five day old etiolated seedling

Data Source

genbank	Release 136, Jun 15 2003
genbank	Updated Nov 2006

Title

WHE1137_E11_I21ZT CS wheat etiolated seedling root normalized cDNA library Triticum aestivum cDNA clone WHE1137_E11_I21, mRNA sequence.

Strain

lab_host E. coli DH10B

Clone

WHE1137_E11_I21

Probe

WHE1137_E11_I21

Remark

DB_xref: taxon:4565

Feature: source: mol_type = 'mRNA';

Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; This EST was generated by sequencing from the 3' end of the clone.; Sequences have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20.; Seq primer: T7 primer.

Note: Vector: Lambda Uni-ZAP XR, excised phagemid pBluescript SK; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. The cDNA clones were in vivo excised to give pBluescript phagemids before normalization was carried out. The mass excision of phagemid library and normalization were done in HT Nguyen lab by D. Zhang at Texas Tech Univeristy. Normalization protocol used was that of Soares'. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).

DNA

ttttttttttttacctgaaaggaaacatgatattgctctgaaactgtagt
aagtctgactgacaaacaatggtctctaccaaaaattcgcaactacacac
ggtatctaccaagggataatttctttctagcagtatgaactttaatacaa
ccccaccagaattacaggccaaaaggagtcaaagggacccaactaacacc
tagacacctagagcgccgtaagatccatgtgagcatccttttgcaaaatc
accacttctctgttcgcacctaggtagaacagcaccctttcttcatgttg
ccggatgaatcggcaacattgatggtggttccttgagtcggaggtccact
tcctgcagcctcctgggcagcgagcgccttcttgcttatgatctgatgga
tgtcggaaaggatagtctgaaacgccttctcgacgttcaaggcttccagt
gccgaggtctcaaggaaggatagcccttccttctctgctaatgcctgtcc
ttcttcctcctgaactgacctcaggtggttaaggtcggatttgtttccaa
ccatcataatgacgatgttggagtcagcatggttacggagctcactgagc
cacctattgatgttttcgaatgatagcttctttgttatgtc


GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.