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GrainGenes Sequence Report: AB061327

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Sequence	AB061327
Subsequence	AB061327_1.cds 2940 6920
External Databases	Data at GenBank Data at EMBL Data at DDBJ
DB Remark	Locus Source: Avena sativa (oat)
Species	Avena sativa
Cultivar	IowaX469
Data Source	genbank Release 141, Apr 15 2004 genbank Release 133, Dec 15 2002 genbank Downloaded 2008-2009
Title	Avena sativa LTR-retrotransposon OARE-1 gag-pol pseudogene for polyprotein.
Gene	gag-pol
Remark	DB_xref: taxon:4498 [ Show all 9 ]
EMBL Feature	repeat_region 1 8665 LTR-retrotransposon Location: 1..8665 feature_gene 2940 6920 Location: 2940..6920 LTR 1 1714 5'LTR Location: 1..1714 LTR 6949 8665 3'LTR Location: 6949..8665
DNA	tgttggaattatgccctagaggaaataataaagatgttattattataatt cttgttcatgataatgtttatattccatgctagaattgtattaagcggaa actttaatacttgtgtggtttgtgaacaccaccgtgtccctagtacgcct ctatggactatctcattgatcaatgatggttaaggtttcctaaccataga catgagttgtcaattgataatgagatcatatcatggagaatgatatgatg gacagacccaaactaagcgaagcaattagatcgtgtcatcgtgttcgtct ttgcgaagcttttcttatgtccaatattgtattccttagaccatgagata atacaactccctggtatcggaagaaagctttgaggtcatcaaacatcatc ctatgagagggtgatcataaaggtgtctctcaggtgatcggaaagtatct gttgggttgtatgtatcgagatgggatttgtccctcccaagttggagaga tatacttcgggcccactcggtaatcgatatcaccaccgcttgcaagcatg tggttaaggagttaatcacaaagtgatatcggattacggaacgagtaaag tacttgctgtgaacgagattgaactaggtatgacggtaccgacgatcgaa tctcgggcaagtaaaatatcgcgagacgaagggactatatatatgggatt gtttgaatcctgacatcgtggttcatccgatatgatcatcgatgaatgtg tgggagtcaatatgggtgcccagaccccgctgttgattattgatagaaga tcatgtctgcatattctcgaacccgcagggtcacacacttaacgtgtctt gacgctaggatagattggataattggtttatgaatttttgttcggagtct cggatgggatccgggatatcacgagaggttccggaatggtccggagaata agattcatataaggcagtgcagtttttggagttcggaattgttccgggtt aatcggtattgtaccggaagcttctagaaccttccgaaaggggaccaacg tggccccaccttccgggagggggcatgggcctatgagtgagtgtcctggc cgcattggccaggggcacaaggccccatagggcccagccgatcctagaga gtttaaatcgtttaaactagagatagggtttctagaagaggggagagtcc atgccccccactccttatcctttgggcttgggggaggggctagggctgcg ccccccctctatataaagaggggtgggggcgcaccaaccccccacacctc tcctccaaaccctagccgccttgctagctttcctctctccctcccgactg tttgtaggcgaagccctactgcagaaattctccaccatatacaccacgcc gtcgtgttgtagatccaatctatctctccaccatacttgctggtccgagg aaggaggagatgtcgaggtgctgcacgtgtgcatctcacggaggcaccgc cacttgtggtgctagatcggatcggatcgcgaggaggagaagcgagtacg actacatcacccatgttccgacgaacgttccgctgtgcgaatcttcaagg gtatgaagatctaatccaatctctctcgttgtttgcatctcctagattag atcttggctttccctctgttcgctccgtagaaaattttgatttactatgc cgcgaaacccttcagtggtatcagagctagatctatgcgtagatgtgttt cacgagtagaacgcaacatggttgttgcgggcgttgatgttttctgttgc aagcctcttgtttgtgttcttcttatgacgcgggatagtgagattgaagc ggtccaggccaaccttacgcgacgtcgttcgcgagaccggctccgcactt gacgtgtggcttgttccacacatgcggctggtggatgtcagtttctctca ctatagttgtcatgggattaacaccggagtttggcaaccataatatcacc gttgtggctttccgtaggtaagaatagttcttagcttctactcccataaa gtcacgtaaaacatgcaacaacaaagtagaggcgtctaacttgtttttgc agggagtgttttctgtgatatggtatggcccaagatgtgatgtgtataat gtatgcgatgatcatgttttgtaatgtttcacgacttgcatgtcgatgag tacacaaccggcagaagccatatggttgtctttataattgtgtatgacct gtgtgtcaacttcttatacgccatgtaatagctttactttattgctaagt agttagcaatagttgtagttgctattcgtggtggaggcaatcatggtgga gtgatggagatcatgccggagcgcacaagatggagatcattgcgcgaaga ttggctataccatgtcacataaagttatatgcatgtgatgtttatccttt tatgtatcttattatgcttagatcgcgacggtagcattataagatgattc ctcacttaaagatcaagataaaaactgtgttctccccaagtatgcaccgt tgcgaaagttcgtcgtgtccaagcatcacgtgatgatcgggtgctataga ctctacgctcacatacaacgggtgcaagccagtttttgcacacgcggaaa tacttgggtctagcttgacgagcctagcatgtacagacatggcctcggaa cacaagaaccgaaaggttaagcatgagtcatatgaatgatatgatcgaca cttcgttgtccaccattgaaaccacatctcttctcgtgatgatcggatta ggtgtggtgaatttggatcgtgttcactaaacaacttgagggatgttgaa tttagtgggagttcatctagtaatttgattaagttgaactatttatcatg aacatagtctaaattgtacttgcaaatactgtagatcacatggacaagtc caacttcaacttcaacgtttttgctgagaaggaaaatcttagaaacaatg ggtctaacttcaccaattggttccgcaatctaagaatcattctgtctggc gaacaaaaggactatgtccttgggaaagcgttaggtgacccccctgctgc aactgcgctggctgatgagaaagctgtctatcagtcgcgcaaagatgatt atggtgtgattaagagcaccatgttgtttgctatggaaacggagcttcaa aatcgttttgaagagtatcccgggcccttcgagattctcgaggagctgaa aaccatgtttcagactcaggcccgttctgagagatatgagatctccgaga agttctttaactgcaagatggaggaagggagttccgttagtgagaacgcc attaagatgacgggctacactcaacgccttgagcaactggaatgcacgat tccagaggagctcaagattgacagggttctgcaatcactccctcccagct acaaaagttttgtagtgactcataatcagattggttccactgatatgatc accgagctcttcgcaaagctgaaggctgcggaagtggacatcaagaaggt taatcatgtgttgatggtcaacaagcccacctttaagaaaggtaagggag ctaagaagcccttcaagaagggcggcggcaagcgcaatgcccctgctgag aagaagctcaggtctggtcccaagccggacactgagtgcttctattgcaa ggacaagggtcactggaagcgcaactgtccgaagtacttagcggacaaga aggctggcaccatcaaaggtatatttgatatacatgttattgatgttttc cttactagccctcgttgtagttcctaggtatttgataccggttcagttgc taacatttgtaactcgaaacaggggctacggaatagacggcggcttgcga gggatgaggtgacgatgcgcgttggcaacggatcaagagttgatgtgatg gccgtcggcacgctctccttagttttaccttcgggattagttttaaacct taataagtgttataatgtgtctgcgttgagcatgaacattatttctggat cgtgtttattgcaagacggttattcatttaaatcggagaataatggttgt tctatttatatgagtaacatcttttatggtcatgcacctcttgtaaatgg tttatttcttctaaatctcgaaagggatgaaacacacatccataacattg aggctaagagatgcaaagtagatagtgataatactacttatttgtggcac tgtcgtctaggtcatattggagtaaagcgcatgaagaaactccattctga tggacttttggagtctcttgattttgaatcatttgacacatgcgaaccat gcctcatgggcaagatgatcaaaacaccgttctccggtatgatggagcga gcaacggacttgttggaaatcatacataccgatgtatgcggaccgatgag tatttcgacgcgcggtggatatcgctatttcctcacttttaccgatgact taagtagatatgggtatatctatttaatgaaacataaatctgaaacattt gaaaagttcaaggaatttcagaatgaagtggagaaccatcgtaacagaaa gattaagtttctacgatccgatcgtggaggtgaatatttgagttatgatt ttctcacgcatcttaaagcaagtggaatcgtttcacaactcacgccaccc ggaacaccacaacgcaatggtgtgtctgaacgccggaatcgaaccctatt agatatggtccgatcaatgatgtctcttactgatttgccgttatcatttt ggggctatgcattagaaaccgctgcattcactttaaatagggctccatct aaatccgttgagacgacaccgtatgacctgtggtttggtgctaaacctaa gttgtcgtttcttaaagtttggggatgcgaagcttacgtcaagaagttga tgccggacaagctcgaacccaaagcggagaaatgcgtcttcataggatac cctaaggaaactattgggtataccttctatcacagaaccgaaggcaaagt ttttgtcgcaaagaacggttcctttcttgagaaggagtttctctcgaaag aagtgagtgggacgaaagtagagctagacgaggttattgaaccttctctt gagttggagagtagcgcagcacctgaaattgttccagtgccgcctgcacc aacaatagaggaagctaatgacaaggatcatgaagcttcggacgatgctg ctactgaacgtcgcaggtcgacaaggtcgcgtgcccctcctgagtggtac ggcaaccctgtcttaactgtcttgttagtagaagacagtgaacctacgaa ctatgaggaagcgatgatgatcccagactctgagaaatggctagaagcca tgaaatccgaattgggatccatgagcgaaaaccaagtatggactttggta gaccctcctagcgaccgaaaggccgttgagtgcaaatggatcttcaagaa gaaaacggaggcggatggtaatgtcaccgtctataaagcacggcttgtcg cgaaaggttttcgacaagttcaaggtgttgactacgatgagactttctct accgtagcgatgtttaagtccattcggattttattagcaattgctgcgtt tcatgatgatgaaatatggtagatggatgtcaagactgcgttcctcaatg gcaacattgatgaagagttgtatatgatgcaacccgaaggttttgtcgat cctaaggatgctagtaaagtatgcaaacttcagtgttccatttatggact gaagcaagcatctcggagttggaaccttcgttttgatcaagtgatcaaga gctttggatttgttccaaattgctacgaagcttgtatctacaagaaagtg agtgggagctcggtgacgtttctggtactatatgtggatgacatattgat tatcggaaatgacatcaacatgcttaacgatgtgaagagttatttgaaca agtgtttttcaatgaaagacctaggtgaagctgcttatatattgggcatc aaaatatatagagatagacaaagacgcctgatagccttaagccagagtac atacctagacaaagttctgaaaaggttcagaatggataaggcaaagaaag gttcagtgcctatgttgtcaggtaagatatctagcaaggctcagtgtcta gctacggtaaatgatagggaagctatgagcaaagtgccttatgcctcggc cataggttccatcatgtatgccatgctgtgtactagaccggatgtgtcca atgctcttagtttgacgagcagatatcaaagtgatccaggagtggaacac tggacagccgtgaagaacatcctaaagtacctaaataggactaaagaaat gttcttagtctatgggggtgatgaacagcttgtcgtaaaaggttacgtcg acgctagttttgacaccgacaaggatgattccaaatctcagaaaggatac gtttatattttgaatggaggagctgtgagctggagaagctgcaagcaaag cgtgatcgcgggatctatagtggaagcggaatacatggctgctgcagaag cgtcaagtgaaggagtttggatcagaaacttcatcactgagcttggcatg gttccaagtgcattggacccactagagatattatgtgacaacactggcgc catagcactcgctaaggaaccaagatatcatccaaagaccaagcatatca actgcaagtttcatataatccgagattatatagcagatggagatctgaag attagcaaagtacatacagatctgaatgtcgcagatccattgactaaacc tcttccacgtgtaaaacatgatcaacacctcagtgccatgggtgtgagat tgttgccaaatgtaaactagattattgactctagtgcaagtgggagactg ttggaattatgccctagaggcaataataaagatgttattattataattct tgttcatgataatgtttatattccatgctagaattgtattaagcggaaac tttaatacttgtgtggtttgtgaacaccaccgtgtccctagtacgcctct atggactagctcattgatcaatgatggttaaggtttcctaaccatagaca tgagttgtcaattgataatgagatcatatcattggagaatgatatgatat acagacccaaactaagagaagcaattagatcgtgtcatcgtgttcgtctt tgcgaagcttttcttatgtcaaatattgtattccttagaccatgagataa tacaactccctggtatcggaagaaagctttgaggtcatcaaacgtcatcc tatgagagggtgatcataaaggtgtctcttaggtgatcggaaagtatctg ttgggttgtatgtatcgagatgggatttgtccctcccaagttggagagat atacttcgggcccactcggtaatcgatatcaacaccgattgcaagcatgt ggttaaggagttaatcacaaagtgatatcggattacggaacgagtaaagt acttgctgtgaacgagattgaactaggtatgacggtaccgacgatcgaat ctcgggcaagtaaaatatcgcgagacgaagggaatatatatatgggattg tttgaatcctgacatcgtggttcatccgatatgatcatcgatgaatgtgt gggagtcaatatgggtgcctagaccccgctgttgattattgatagaagat catgtctgcatattctcgaacccgcagggtcacacacttaacgtgtcttg acgctaggatagattggataattggtttatgaatttttgttcagagtctc ggatgggatccgggatatcacgagaggttccggaatggtccagagaataa gattcatataaggcagtgcaggttttggagttcggaattgttccgggtta atcggtattgtaccagaagcttctagaaccttccagaaggggaccaacgt ggccccaccttccgggagggggcatgggcctatgagggagtgtcctggcc gcattggccaggggcacaaggccccatagggcccagccgatcctagagag tttaaatcgtttaaactagagatagggtttctagaagaggggagagtcga tgccccccactccttatcctttgggcttgggggaggggctagggctgcgc cccccccctctatataaagaggggtgggggcgcaccaaccccccacacct ctcctccaaaccctagccgccttgctagctttcctctctccctcccgact gtttgtaggcgaagccctgctgcagaaattctccaccatatacaccacgc cgtcgtgttgtagatccaatctatctctccaccatacttgctggtccgag gaaggaggagacgtcgaggtgctgcacgtgtgcatctcacggaggcaccg ccacttgtggtgctagatcggatcggatcgcgaggaggagaagcgagtac gactacatcacccatgttccgacgaacgttccgctgtgcgaatcttcaag ggtatgaagatctaatccaatctctctcgttgtttgcatctcctagatta gatcttggctttccctctgttcgctccgtagaaaattttgatttactatg ccgcgaaacccttca

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