GrainGenes Sequence Report: Z84553

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Sequence

Z84553

External Databases

Data at GenBank

Data at EMBL

Data at DDBJ

DB Remark

Locus Source: Hordeum vulgare

Keyword

BARE-1 retrotransposon

long terminal repeat

Species

Hordeum vulgare

Data Source

genbank

Release 135, Apr 15 2003

Title

H.vulgare BARE-1 long terminal repeat DNA; ID DS97.

Remark

DB_xref: taxon:4513

Feature: repeat_region: transposon = 'BARE-1'

Feature: source: mol_type = 'genomic DNA';

Locus Comment: clone appears to derive from an insertion of one BARE-1 element; into UTR; region of a second BARE-1.

EMBL Feature

repeat_region	1	753	Location: 1..753
5_UTR	207	572	matches UTL of BARE-1a retrotransposn (Z17327) nt 2134-2504	Location: 207..>572
LTR	1	206	matches nt 1617-1829 of BARE-1 5' LTR, 3' terminus	Location: <1..206
LTR	573	740	matches nt 10-177 of BARE-1 5' LTR, 5' terminus	Location: <573..>740

DNA

cggaaccgttcgtgggacgtatcatgggacgatagtgatttgaatcacga
acgtgtaccactacatcaaccgcgtgtctttgacgcttcccgctgagcga
tctacaagggtaatcatatctaatctcctctcgtagatggacatcaccat
gataggtcttcgtgtgcgtaggattttttttgtttcccatgcaacgttcc
ccatcagtggcatcatgagctaggtcatgcgtagatgtatctcgagtaga
cacaaaaggttttgtggacggtgatgttcgatttactgccctccttagtc
ttttcttgattcgacggtattgttggattgaagaggcccggaccgacata
acctcgtatgcttaccgagagactggtttcatcgattgacatgcaacctc
gtcgataaagatgactagcggtgtcggtttctccaacttagttgaattgg
tttgactgaggcggtcattcgagaggttaaatagcaattgcacatctccg
ttgtggtttttgcgtaagtaagatgcgatcatactagatacccatagcag
ccacgtaaaacatgaaacaacatatgccctagaggcaataataaaatggt
tattatcatattttcttgttcatgataatcgtttattgttcatgctataa
ttgtattaacaggaaacagtaatacatgtgtgaataaatacatcacaatg
tgtccctagcaagcctctagttggctagctcgttagtcaatagatgatcc
gga


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