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GrainGenes Sequence Report: Ta.8871.1.A1_at

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Sequence	BE403248
Contig	Ta.8871.1.A1_at NSFT03P2_Contig13892
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC278021
wEST map position	BE403248
NCBI UniGene	Ta.56201
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, weakly similar to NP_001130970.1 hypothetical protein LOC100192075 [Zea mays]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	1AL 1BL
Clone Library	Wheat etiolated seedling root cDNA library
Tissue	Root
Developmental Stage	Five day old etiolated seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0430_C02_E04ZS Wheat etiolated seedling root cDNA library Triticum aestivum cDNA clone WHE0430_C02_E04, mRNA sequence.
Other Name	WHE0430_C02_E04ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA008E1X
Clone	WHE0430_C02_E04
Probe	WHE0430_C02_E04
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Strategene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.8871.1.A1_at 920 WHE2AFFY Ta.8871.1.A1_at 777 WHE2AFFY Ta.3748.1.A1_at 60 WHE2AFFY
DNA	agctcttctcatgtgtgacattcaggactcctgatatttccgcgatgcac catgatgaaacccctgatctgaggattgtagctgaaaaactggcagaaac cctgaagatcaaagacacgtccttggagactcggaagatggtcgtcgaaa tctgcgacattgtgaccagcaggtctgcccggctggctgctgccgggatt gtggggataatcaggaagattggtaggggcaccccaggcgacaagaggag gacagtcatcgcgatcgacggcgggctgtttgagcattacgccaagttcc ggcagtgcctggagagcacgctggtggagctgcttggcaaggaagcatcg gagttggtggcagtgaagctcacaaaggacggttcgggcgtcggagctgc cctgattgctgctgctcactctcagtacctcaactgatcaagttacaagc ttttctcagacagtggctgatgttatttgactctagtgttctttgtacat ttcaaagaagcctgatgtgcctct

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