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GrainGenes Sequence Report: NSFT03P2_Contig5372

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Sequence	BE405200
Contig	NSFT03P2_Contig5372
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
wEST map position	BE405200
DB Remark	Locus Source: Triticum aestivum (bread wheat)
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	1BL 3AS 5BS 6BL
Clone Library	Wheat etiolated seedling root cDNA library
Tissue	Root
Developmental Stage	Five day old etiolated seedling
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE1211_C08_F15ZS Wheat etiolated seedling root cDNA library Triticum aestivum cDNA clone WHE1211_C08_F15, mRNA sequence.
Other Name	WHE1211_C08_F15ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA008E1X
Clone	WHE1211_C08_F15
Probe	MAG1049 WHE1211_C08_F15
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Strategene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.10935.1.S1_a_at 98 WHE2AFFY Ta.10935.1.S1_a_at 94 WHE2AFFY Ta.10935.1.S1_a_at 82 WHE2AFFY Ta.10935.1.S1_a_at 62 WHE2AFFY
DNA	cacgtcagcagcagaactgcggcggccgccgccatcgctccccggcgacc gatctagattacatcttgcaccggccaacggatcggagagcacaagaccg gccgaacctgagatttattggaataagagatctgaaagaggtgcatgtgg tcaagtcctggatctcattgtttgctgaatttttgtggacggagaatttt ccggtgctttgtggatgttccttctggatgggggccgggtgtctcacgtg gaagaatcgactcatatggcttctggcggtcaatgccgtcgtgtcgcatc gtcgatcccagctagccgtaaacagattgacatatatctttaattatttt gtttgtggacgtatgatcaaatggattcagaaatactctatctgttccga acggaggggggtagtgattccagctgcaatttcatctttggggaaacagt atacccagcaaaaagaaacagtagctctggtggctaatttaatcactctg tagaaacctttcattgaaggatcaagaaccgcaccttgcttccatctttc tttatatgttcagtatcgtctcg

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