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GrainGenes Sequence Report: Ta.28306.2.S1_at

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Sequence
BE406485
Contig
Ta.28306.2.S1_at
NSFT03P2_Contig16091
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC295354
NCBI UniGene
Ta.38753
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001063584.1 Os09g0502000 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Clone Library
Wheat etiolated seedling root cDNA library
Tissue
Root
Developmental Stage
Five day old etiolated seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0416_g11_n22zB Wheat etiolated seedling root cDNA library Triticum aestivum cDNA clone WHE0416_g11_n22, mRNA sequence.
Other Name
WHE0416_g11_n22zB  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA008E1X
Clone
WHE0416_g11_n22
Probe
[Wcl191ct794cn1203]
{SpCl-206}
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Strategene pBluescript SK reverse primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Roots were harvested. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
agccgctccgccgcagttctcccaagatggcggtgcctctgctgaagaag
gcgatcgtgaagaagagggtgaagcacttcaagagggcgcacagcgaccg
ctacatcggcctcaagcaaagctggcgtaggccaaagggtatcgactccc
gcgtcaggcggaagttcaagggatgcaccttgatgcccaacatcgggtat
ggttcagacaagaagaccaggcactacctgcccaacaagttcaagaagtt
tgttgtccacaatgtctctgagctggagctgcttatgatgcacaacagga
cctactgtgctgagatcgcacacaacgtgtccacacagaagcgcaaggcg
atcgttgagcgtgctgcgcagctcgacgtcgtggtcaccaacaagcttgc
ca

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