Query (optional)   in Class  

GrainGenes Sequence Report: BE423963

Sequence
BE423963
Contig
TaAffx.10980.1.S1_at
Tracefile
[ Download ]
[ View ]
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC293547
wEST map position
BE423963
NCBI UniGene
Ta.13782
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001044958.1 Os01g0874700 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
1AL
1BL
1DL
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0066_D04_H08ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0066_D04_H08, mRNA sequence.
Other Name
WHE0066_D04_H08ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0066_D04_H08
Probe
WHE0066_D04_H08
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
TaAffx.10980.1.S1_at777WHE2AFFY
[ Show all 13 ]
DNA
ccatggacaccatgtacagacaggttttttatacagatcagcaacacttc
ttcggcccctcctgaccatcactatctcaatatttccccaccttctgatc
ccagccaggagtacctatctcattcatagaacaagcccactttggttccg
agtaaacacacatacaaatccgacccccaaaaaacagcaagccaacaaat
caaagaacccgacacgaaaacggccatctactaaaatcttatttgctctc
ccctatcatgcgacatgttcaaatggtggcggtggtatggacctggttgg
cggttgtatcagcagctggaacctcatcaggcggaggattcggtggagct
cttcaccttgaatcggcacagcagcttcttcttcttcgacgtcgggttgt
tgacgatgagcaccaccttgccaggctcgctcgctttgaagctacccttc
atgattggctcctcgttggcgggcaccttccgagtcttctgcacgatgac
cgtgtag

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.