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GrainGenes Sequence Report: BE424114

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Sequence
BE424114
Contig
Ta.1525.1.S1_at
NSFT03P2_Contig11032
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC287657
wEST map position
BE424114
NCBI UniGene
Ta.1525
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, weakly similar to NP_001063961.1 Os09g0567400 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
4AL
4DS
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0076_G05_M10ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0076_G05_M10, mRNA sequence.
Other Name
WHE0076_G05_M10ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0076_G05_M10
Probe
WHE0076_G05_M10
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
Ta.1525.1.S1_at821WHE2AFFY
Ta.10836.1.A1_at303WHE2AFFY
Ta.10836.1.A1_at254WHE2AFFY
DNA
ccccgtctccaccgctcagtcccccggaccgccggacctctcctcgcctt
gccatggcagccgcagcactgagggcgcagctgaacgcccatatcgccgg
catgtacaccaatggtgtggtggacgaggatacattctaggagctgcggg
acgagggcaccaccgccgaggtctcccgcctcttcatctacgacgcctcc
gagatcatcgacgacatcgacctcctgatggaggagcctgaagtggactt
tgacgaagtggaagccctgacgcagcagctcatgcggtgcacctccagtg
ttggtgcacagcaagtgaacctcgcctgcatgcacttctgcaatttctat
gccatacaatacaaacaagggtgtctcgtgtcattggctcttgttaggaa
tgagttctatattgtgcgacatgagttggagatcgtgatgcagctcgaag
agcagatcgcggcatgtggtcctgact

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