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GrainGenes Sequence Report: NSFT03P2_Contig13233

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Sequence
BE424519
Contig
TaAffx.128557.1.S1_at
NSFT03P2_Contig13233
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC331365
wEST map position
BE424519
NCBI UniGene
Ta.54173
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001054851.1 Os05g0192100 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
4AL
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0084_A03_A06ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0084_A03_A06, mRNA sequence.
Other Name
WHE0084_A03_A06ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0084_A03_A06
Probe
WHE0084_A03_A06
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
TaAffx.128557.1.S1_at963WHE2AFFY
[ Show all 18 ]
DNA
actcccgtacgtcttattgataataccaattgatcccaactgaggaaact
caccaagcaacaacaacagacgggatcatgtatataattattcagaagga
gcttattcatcgaccacaagaaatcgatggctgcgggcctagccgatgta
gtacatggggtcgggcagcttgaaagtgcgagcaccctcgggtgcgccga
ggatgtcgctccactggtcgccgatgtttcccacgatgacatacccagcg
tcctgcagcttttgcctctcgccggatttgtagatcactgcggagccctt
gaaccctggttgcttgagcagcaggtacatccatccggagatgccttggc
ggcggaggttggcaactgtgatggccctctggtcctcggtccggcccgtt
aggaacaccggcttgatgcccactgtgagcagcttgttgtacagccgctt
tgtctctggtagcgcaggcgcgctcccctccagcacgtacgcgttgtagc
tcgtcgcattgtacg

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