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GrainGenes Sequence Report: Ta.9405.1.S1_x_at

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Sequence
BE424946
Contig
Ta.9405.1.S1_x_at
NSFT03P2_Contig12110
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC320593
wEST map position
BE424946
NCBI UniGene
Ta.9405
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001055939.1 Os05g0496500 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
1AS
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0088_B08_C16ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0088_B08_C16, mRNA sequence.
Other Name
WHE0088_B08_C16ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0088_B08_C16
Probe
WHE0088_B08_C16
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
Ta.9405.1.S1_x_at747WHE2AFFY
[ Show all 9 ]
DNA
tttttttggtatattcttacctgagagcatgtgattgttattctgagatg
aaacatcaaacagtccaatcttagcaacacatgggcgtccgggtctccaa
aaccacagtccacagacaatagcagacagttttgacacacgaggagaaaa
cgttctctctcatcgacggacaaagacaacggatgatgtttcacgctctc
agcatatgaaagccacctcggtgtgcctgtcgctgcagtagagcccaggc
tgctgcttgtacccctgcttggacagcagcccgcgcgccctcagcaccag
ctccttgttgctcaccttgccgtccttctccgcgaggatggcctggatgg
cgttgctgagcgcgccgtaggacaggcccttggcggtcgtcgcgtccgcc
gaggtctggtcggtctggcacccgctgatgagga

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