Query (optional)   in Class  

GrainGenes Sequence Report: TaAffx.14475.1.S1_at

[Submit comment/correction]

Sequence
BE425117
Contig
TaAffx.14475.1.S1_at
NSFT03P2_Contig13912
Tracefile
[ Download ]
[ View ]
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
wEST map position
BE425117
NCBI UniGene
Ta.35532
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus'
Keyword
EST
Germplasm
CHEYENNE
Species
Triticum aestivum
Cultivar
Cheyenne
Chromosome
7BL
7DS
Clone Library
Wheat endosperm cDNA library
Tissue
Endosperm
Developmental Stage
5 to 30 days post anthesis seed
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0081_F10_L19ZS Wheat endosperm cDNA library Triticum aestivum cDNA clone WHE0081_F10_L19, mRNA sequence.
Other Name
WHE0081_F10_L19ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA001E1X
Clone
WHE0081_F10_L19
Probe
WHE0081_F10_L19
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda ZAP II, excised phagemid; Site_1: EcoRI; Seeds collected, endosperm isolated, and RNA prepared by Susan Altenbach. Library constructed by Stratagene, Inc. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab.
DNA Homology
TaAffx.14475.1.S1_at654WHE2AFFY
TaAffx.14475.1.S1_at601WHE2AFFY
DNA
cctgattacatatgattggtaaaaacaaacatgacagtaaacatattata
tggtacgacacacttaaaacattaatgaaaatacaacttgttgtaacgaa
aaacttataagataggtgattcagaccccccatggatcatgatggcacac
gactatgagatcttggtgcatagttcacccggccgaggctaaacaacagg
aaaatcagggcaataccacggcttggtgaaattgtcacctgttccttctg
taggagcactaagggtaaggggaactacgaccagcttgggtttcttgaac
accaagcggcgcgacgaagaagcccctagggattcccttgaggagcttaa
gcagctttccgcctgcaccatgacgttcatccgttggatcggcggctgtg
tctttggagcgggcgcgtgcgctggttgcgggctgagccgtgctcgtgcc
ggacgcggcatgtgcaggaacgggtatgc

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.