GrainGenes Sequence Report: BE454102

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Sequence

BE454102

External Databases

NCBI UniGene

DB Remark

Locus Source: Hordeum vulgare subsp. vulgare

UniGene title 'Transcribed locus, moderately similar to NP_001048594.1 Os02g0827500 [Oryza sativa (japonica cultivar-group)]'

Keyword

EST

Species

Hordeum vulgare subsp. vulgare

Cultivar

Morex

Clone Library

Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP)

Tissue

5-45 DAP Spike

Data Source

genbank	Release 135, Apr 15 2003
genbank	Updated Nov 2006

Title

HVSMEh0080I08f Hordeum vulgare 5-45 DAP spike EST library HVcDNA0009 (5 to 45 DAP) Hordeum vulgare subsp. vulgare cDNA clone HVSMEh0080I08f, mRNA sequence.

Strain

lab_host SOLR

vulgare

Clone

HVSMEh0080I08f

Probe

[Bcl55ct283cn1223]

{SpCl-40}

Remark

DB_xref: taxon:112509

Feature: source: mol_type = 'mRNA';

Locus Comment: On Jul 26, 2000 this sequence version replaced gi:9462220.; Contact: Wing RA; Clemson University Genomics Institute; Clemson University; 100 Jordan Hall, Clemson, SC 29634, USA; Tel: 864 656 7288; Fax: 864 656 4293; Email: rwing@clemson.edu; Total hq bases = 547; Seq primer: AATTAACCCTCACTAAAGGG; High quality sequence stop: 702.

Note: Vector: lambdaZAP; Site_1: EcoR1; Site_2: Xho1; Plants were grown in the greenhouse at the University of California, Riverside (Fenton, SJ Close, TJ Close). Whole spikes with awns trimmed were collected at 5, 10, 15, 20, 30 and 45 DAP (Fenton). Total RNA was prepared from each pool, equal quantities of all six RNA pools were combined, poly(A) RNA was purified from the mixture, one primary unamplified cDNA library was made, and 1 million pfu were in vivo excised to give pBluescript SK(-) cDNA phagemids (Choi)in the TJ Close lab at the University of California, Riverside. Phagemids were plated and picked at the Clemson University Genomics Institute (CUGI) (Begum, Palmer, Frisch, Atkins and Wing). Plasmid DNA preparations, DNA sequencing and sequence analysis were performed at CUGI (Wing, Yu, Frisch, Henry, Simmons, Oates, Rambo, Main). The sequence has been trimmed to remove vector sequence and contains a minimum of 100 bases of phred value 20 or above. For more details on library preparation and sequence analysis see http:

DNA

atgtctcacaggttccactttctctggcgataaaaatcacatctgtgaga
ggtaccttgcgcatacatctgaagccccctccgtcggatcaactctggta
tggattcacatctatgcctgacctggagtgggacttggaatcttccgtcg
gggacaggaaaattaccaacagtcgcatcgcgtcacttatcggtaaccga
atcaaggtttcgctccgtgatagcttggtgcttccaaactgtgaatgcat
ttccttgccagggatgctggcagaaaaggatgactgggtcccccgcaagg
agggaccttatatctggctcaaccacgaacccattgaggccaaaagccat
gtcgcagccgccacaccaacccatcctgaggaagctggtcccaaggacga
tgccatcagcaaaagcacaacaccaagtcttcctgcttcctctgctggga
gcgaggagtcactgaaatccattgatgagtcaaccgaagaccctcctccc
gcagaagcatctcaggcgcggtctcaggtagctgatactacctctcctcc
tcacccggacgctactgaggagctgaggaaaccgctgctggccacggaga
ggctccaggagggcgnccacttcgagagcagtgcgggctccccgctgtac
acctccctgagggccatcatacccgcgggggagcagcagcagcagcagca
ggcggtggcggcaan


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