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GrainGenes Sequence Report: TaAffx.113177.1.S1_s_at

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Sequence
BE489921
Contig
Ta.5608.1.S1_s_at
TaAffx.113177.1.S1_s_at
NSFT03P2_Contig16447
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC284806
NCBI UniGene
Ta.35895
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, strongly similar to NP_001054011.1 Os04g0635800 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Clone Library
Wheat cold-stressed seedling cDNA library
Tissue
Seedling
Developmental Stage
Five-day old seedling
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0363_D04_G07ZS Wheat cold-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0363_D04_G07, mRNA sequence.
Other Name
WHE0363_D04_G07ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA007E1X
Clone
WHE0363_D04_G07
Probe
[Wcl250ct903cn1344]
{SpCl-609}
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
agccgccggcgaagcctccccaccaccgaaccctagattccaccagtcag
atccgatctcgagcgccggcggcggcggcggcggcgaagatggtgtgcat
ccggcaggcgacgatcgacgacctgctggcgatgcaggcgtgcaacctga
tgtgcctgccggagaactaccagatgaagtactacttctaccacatgctg
tcgtggccgcagctgctgttcgtcgccgaggactacggcggccgcatcgt
cggctacgtgctggccaagatggaggaggacccctcggagccctgccacg
gccacatcacctcgctcgcggtcctccgatcccaccgcaagctcggcctc
gccaccaagctcatgtcggccgcgcaggccgctatggaccaggtcttcgg
cgccgagtacgtctcgctccacgtccgccgctccaaccgcgccgccttca
acctctacacctccaccctcggctaccagatccatgacatcgaggccaag
tactacgccgacggcgaggacgcctacgacatgcgcaagatgctgcgcca
gcccgtgcccaagaagcaccaccaccaccaccacgccggcggggggctgc
tgctcccacgatgcccccgct

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