GrainGenes Sequence Report: BE490780
Sequence
BE490780
Contig
NSFT03P2_Contig18686
Tracefile
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External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC312225
NCBI UniGene
Ta.54384
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001045673.1 Os02g0115700 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Clone Library
Wheat cold-stressed seedling cDNA library
Tissue
Seedling
Developmental Stage
Five-day old seedling
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0368_E07_I14ZS Wheat cold-stressed seedling cDNA library Triticum aestivum cDNA clone WHE0368_E07_I14, mRNA sequence.
Other Name
WHE0368_E07_I14ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA007E1X
Clone
WHE0368_E07_I14
Probe
[Wcl354ct1074cn1549] {SpCl-417} BE490780
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized , germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Seeds were surface-sterilized, germinated and grown aseptically in the dark at room temperature on filter paper with water, nystatin and cefotaxime in covered crystallization dishes. Five-day old seedlings were transferred to 5 C cold room and kept for 48 hr. The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA
acttcatgcaccgggacgaggaggtggactactacccgtcccgccacgcg
ccgctccggcacgccgagccggccagcttccccgtgccgacgcggcccgt
cgtcgggaaaagggagaagacgaggatcaagaaggagaacgacttcgtgc
agcccggggagaggtaccgcagctgggcgcccgaccggcaggacaggttc
gtgcgccgcttcgccgacgcgctcgcccgccccaaggtcagccacgagct
ccgcgtcatctggatcgacttcctctccaagtgtgacaagtcgtgcggca
tgaaggtggccaaccgtctcaacgtgaagccaagcatgtgatgtggatgg
atgatggatggaccgttctgtgtgtaaactttgtgctatatataggtatc
atggaccagcaataagagaccatgccagctataatgtggatcatgtggtc
gattacctaccgtgctgctactaataagttactatccttttcttttatgt
tttttttggggtgatccttttctttatgttgcagtaacttacttg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: BE490780
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