GrainGenes Sequence Report: NSFT03P2_Contig18147
Sequence
BE492524
Contig
Ta.13478.1.S1_at NSFT03P2_Contig18147
Tracefile
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External Databases
Data at GenBank Data at EMBL Data at DDBJ
wEST map position
BE492524
DB Remark
Locus Source: Triticum monococcum
Keyword
EST
Germplasm
T. monococcum ssp. monococcum DV92
Species
Triticum monococcum
Cultivar
DV92
Chromosome
3AS 4AL
Clone Library
Triticum monococcum vegetative apex cDNA library
Tissue
Vegetative shoot apex
Developmental Stage
Three weeks-old plants
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE553_H08_H08ZE Triticum monococcum vegetative apex cDNA library Triticum monococcum cDNA clone WHE553_H08_H08, mRNA sequence.
Other Name
WHE553_H08_H08ZE [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli XLOLR
DNA Library
TM011XXX
Clone
WHE553_H08_H08
Probe
WHE553_H08_H08
Remark
DB_xref: taxon:4568 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene T3 primer. Note: Vector: Lambda pBK-CMV (Lambda Zap Express), excised phagemid; Site_1: EcoRI; Site_2: XhoI; The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised at the University of California, Davis (V. Echenique, B. Stamova , J. Dubcovsky). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda pBK-CMV (Lambda Zap Express), excised phagemid; Site_1: EcoRI; Site_2: XhoI; The tissue, total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised at the University of California, Davis (V. Echenique, B. Stamova, J. Dubcovsky). Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.13478.1.S1_at 640 WHE2AFFY
DNA
caatggatcacttggagagggcaaaacggcaggaggaagcaccattaatc
gaggaggccttccagaaacgcctcgaggaagaaaagatccttcatgagca
agagcagctgagagagattgagctcagcaagcaacaccatgcgggtgact
tgcaggagaaaaataggctttctagattgttggagcataagaatgctttc
caggaaagaattgtccaacgccgtgaatctgagtttagtagcctaaggaa
agagagggaagaaaggattaatcagttgctatcttcaagaaagcgtgaaa
gggagactgtacgcaaattgatgtattttctg
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: NSFT03P2_Contig18147
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