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GrainGenes Sequence Report: BE494321

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Sequence
BE494321
Contig
NSFT03P2_Contig18664
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC4076
wEST map position
BE494321
DB Remark
Locus Source: Secale cereale (rye)
Keyword
EST
Germplasm
Blanco
Species
Secale cereale
Cultivar
Blanco
Chromosome
1BS
2AS
2DS
Clone Library
Secale cereale anther cDNA library
Tissue
Anther
Developmental Stage
Adult plant before anthesis
Data Source
genbankRelease 135, Apr 15 2003
genbankDownloaded 2008-2009
Title
WHE1253_E05_J09ZS Secale cereale anther cDNA library Secale cereale cDNA clone WHE1253_E05_J09, mRNA sequence.
Other Name
WHE1253_E05_J09ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
SC024E1X
Clone
WHE1253_E05_J09
Probe
WHE1253_E05_J09
Remark
DB_xref: taxon:4550
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Anthers were harvested and pooled from early meiosis to late meiosis. The tissue, total RNA, and poly(A) RNA were prepared (Butler, Ross and Gustafson) at University of Missouri, Columbia. A cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.24129.1.S1_at795WHE2AFFY
Ta.24129.1.S1_at325WHE2AFFY
Ta.28073.1.S1_at208WHE2AFFY
Ta.26581.1.A1_at76WHE2AFFY
DNA
ctgatcaccagcctatcaaggagtctgcacttggaaacatccccaccatt
gcgttctgcgacactgactctcctatgcgttacgttgatatcggcattcc
tgctaacaacaaggggaagcagagcattggttgcctattttggctgctcg
ccaggatggttctgcagatgcgtggtaccatcctcccaggacacaagtgg
gaaatcatggttgatctgttcttctacagggacccggaggaagctaagga
gcttgaggatgatgaggctttgggtgctcctgagtacgctgcagttgcag
agtacactgccccagcgggagatacctgnggtgctgaatggccaggagct
gcagctccagctgctgccgttgaagccccggctggggctgagtggactgg
tgctccagctcctgcggctgatggatgggatgctgttgccgcacctgccc
ctactggctgggaacagggcagcgctccggcacctgcagcagcaccagcc
gccactccgaa

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