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GrainGenes Sequence Report: BE498683

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Sequence
BE498683
Contig
Ta.4109.1.S1_at
NSFT03P2_Contig11454
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC322770
wEST map position
BE498683
NCBI UniGene
Ta.4109
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001052037.1 Os04g0112300 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
2AS
2BS
2DS
3AS
3DS
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE0964_A10_A20ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE0964_A10_A20, mRNA sequence.
Other Name
WHE0964_A10_A20ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA019E1X
Clone
WHE0964_A10_A20
Probe
WHE0964_A10_A20
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.4109.1.S1_at833WHE2AFFY
TaAffx.56041.1.S1_at94WHE2AFFY
TaAffx.56041.1.S1_at66WHE2AFFY
DNA
cataataagaatgtataatttggacagcgagatgaccagcaggattttcc
aggcaccacttagcgacctgtgctccttgaaaagttctggcaatgctcct
ggtagcgttcaaggtgatgcggtcgaacctagtggagtaccagacgagag
tcttcagtcatccctggaaaaaccatctgatacagaagtatcagatggga
atgcgcagtcaacgacagcgcagccaattgttataggggcccctgagcct
gcaacggatgagcaccttaatcaaggtgacatcccaattgatatagaggc
ccctgagcctgcggatgagcaccttaatcaaggtggcatttctatgccgg
attgcaaaggaagtaatggcaattcaatagctcccaaagcaccgagagca
ggaaaagcaccctcaccggagaggatgaaatattggggagaacatggctt
tagcagtttgattgttgctgctccgggacatgaggtggagagtg

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