Query (optional)   in Class  

GrainGenes Sequence Report: Ta.30735.1.S1_at

[Submit comment/correction]

Sequence
BE586102
Contig
Ta.30735.1.S1_at
NSFT03P2_Contig16767
External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC284286
NCBI UniGene
Ta.17316
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus, moderately similar to NP_001105909.1 12-oxo-phytodienoic acid reductase5 [Zea mays]'
Keyword
EST
Species
Triticum aestivum
Cultivar
Sumai3
Clone Library
KSU wheat Fusarium graminearum infected spike cDNA library
Tissue
Spike
Developmental Stage
Adult plant
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
Est#9SP6_B01_b1_009 KSU wheat Fusarium graminearum infected spike cDNA library Triticum aestivum cDNA clone Est#9SP6_B01_b1_009, mRNA sequence.
Strain
lab_host E. coli JM109
Clone
Est#9SP6_B01_b1_009
Probe
[Wcl550ct1344cn1861]
MAG2960
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: John Fellers; US Department of Agriculture, Agriculture Research Service, Plant; Science and Entomology Unit; Dept. of Plant Pathology, 4006 Throckmorton Hall, Kansas State; University, Manhattan, KS 66506, USA; Tel: 785-532-2367; Fax: 785-532-6167; Email: jpf@alfalfa.ksu.edu; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: SP6.
Note: Vector: pGEM-T easy; Site_1: SacII; Site_2: SpeI; Plants were grown in the greenhouse. Spikes were sprayed with Fusarium graminearum (at what stage). Total RNA, and poly(A) RNA were prepared from infected spikes. cDNA was prepared using the SmartTM PCR cDNA synthesis kit from Clonetech. cDNA was cloned into the pGEM-T easy vector from Promega.
DNA
agaagaaatcaatgaccttattcctttaacatagttctgatacgtaaggt
aaatgatcggacgagaggaaggagggattcattcatgaaaggtccgttca
gatatcggatggtagaaatgggtagtcagtgtatccaataactggatcag
agaggtagaaagtatctctgttgtacttgttgagaggaccatctatctca
aacctccggggcaagtctggattggacagaaacaagcgcccatatgcaac
caaatcagcatagccatcggcgatcgctttatctgcatcatccctaccat
atccaccagccacgatgaatggtaccttgaaagcatacctaatggcacga
aggctgtacggggactcaagctttgctgcaatatggaccatgcgtggtta
caccatgtggcattaccaggatcccaatctcgagcaaaacctgtaccatg
aataggcccacag

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.