Query (optional)   in Class  All Allele Author Colleague Collection Assembly Gene Gene Class Gene Product Germplasm Image Journal Keyword Library Locus Map Map Data Marker Pathology Polymorphism Probe Protein QTL Rearrangement Reference Sequence Species Trait Trait Study Two Point Data  

---

GrainGenes Sequence Report: BE590634

[Submit comment/correction]

Sequence	BE590634
Contig	Ta.9592.1.S1_at Ta.9592.1.S1_x_at NSFT03P2_Contig16006
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC303504
wEST map position	BE590634
NCBI UniGene	Ta.54800
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, moderately similar to NP_001056204.1 Os05g0543400 [Oryza sativa (japonica cultivar-group)]'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	1AL 1BL
Clone Library	Wheat 20-45 DAP spike cDNA library
Tissue	Spike and seed
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0858_A03_B06ZS Wheat 20-45 DAP spike cDNA library Triticum aestivum cDNA clone WHE0858_A03_B06, mRNA sequence.
Other Name	WHE0858_A03_B06ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA017E1X
Clone	WHE0858_A03_B06
Probe	WHE0858_A03_B06
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 20 DAP and seeds at 30 to 45 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors ). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 20 DAP and seeds at 30 to 45 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.9592.1.S1_at 979 WHE2AFFY Ta.9592.1.S1_x_at 979 WHE2AFFY Ta.341.1.S1_at 309 WHE2AFFY Ta.341.1.S1_at 70 WHE2AFFY TaAffx.30658.1.S1_at 54 WHE2AFFY
DNA	caatggcggcggcggcgaacggcgggggcggggagaccaagcggcgttcg cgcggatctacgacgcgctcaaggcggagctgctccgggaccccgccttc gagtacacggagtcgtcgcaccagtggatcgaccgcatgctggactacaa tgtactgggaggaaagtgcaaccgtgggctctctgtggtcgatagctata agctgttgaaaggcgtcgatgttcttaccgaggaggagatgtttcttgcc tccactctcggttggtgcattgaatggcttcaagccttctttcttgtgct cgatgatatcatggacgactcccacactcgacgtgggcagccttgttggt ttagggtgcctcaggttggcttcattgctgtaaatgatgggattctcctt cgcaaccatatttcgagaatgcttcggctccactttaagaagaagcctta ctatgccgatctccttgatttattcaacgaggttgagttcaagacagctt ctggtcaaatgctggaccttattacaacccacgagggagaaaaagatcta acgaaatataacattggg

GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.