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GrainGenes Sequence Report: TaAffx.65878.1.S1_s_at

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Sequence
BE591178
Contig
Ta.483.1.S1_at
TaAffx.65878.1.S1_s_at
NSFT03P2_Contig7539
Tracefile
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External Databases
Data at GenBank
Data at EMBL
Data at DDBJ
TIGR Gene Index
TC341399
wEST map position
BE591178
NCBI UniGene
Ta.55340
DB Remark
Locus Source: Triticum aestivum (bread wheat)
UniGene title 'Transcribed locus'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
5AS
5BS
Clone Library
Wheat heat stressed flag leaf cDNA library
Tissue
Flag leaf
Developmental Stage
Full tillering stage
Data Source
genbankRelease 135, Apr 15 2003
genbankUpdated Nov 2006
Title
WHE1655-1658_N11_N11ZS Wheat heat stressed flag leaf cDNA library Triticum aestivum cDNA clone WHE1655-1658_N11_N11, mRNA sequence.
Other Name
WHE1655-1658_N11_N11ZS  [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA031E1X
Clone
WHE1655-1658_N11_N11
Probe
WHE1655-1658_N11_N11
Remark
DB_xref: taxon:4565
Feature: source: mol_type = 'mRNA';
Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer.
Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants at full-tillering stage were heat stressed under four conditions: (1) 38 C for 2 hours, (2) 38 C for 4 hours, (3) 2 days of cyclic treatment of 38 C for 2 hours, (4) 2 days of cyclic treatment of 38 C for 4 hours, at Texas Tech University (D Zhang in Nguyen lab). Total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton, Malatrasi) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.483.1.S1_at533WHE2AFFY
[ Show all 7 ]
DNA
ttgaatttgtgtagctcagaacttgaatgtggcgttttcgtgtctgcttc
atcatagcagttgtgccgcaactctttcaataatctagcaatattaggcc
actcttgccatatttggaaacaacagctgtccagcaatttgactgaagat
gtccagctgttcagtaaatgatatgaattgtgcattggtgcgggagagag
gcagctcatcctggatacattgcaagttttcaccatgtcctgagacggat
ggacttaaaatcctgactacggtcacacgagatgctttgggtaatgttca
actgtttcaggaaacatgtacaagtattatttgtagcactagcattagac
agtagtacgtatctgaaatggaatggttgtactagaaaaccttagatgtt
agtaatatcgatcgggtgttgtagatgaatcttttgccgctntcagcgtc
gtcttacattacctccttgtttgaaaaaacgtgaagcgccagttcagata
aaaaaaaaaaaaaaaaaaactc

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