GrainGenes Sequence Report: Ta.9331.1.S1_x_at
Sequence
BF201217
Contig
Ta.9331.1.S1_at Ta.9331.1.S1_x_at NSFT03P2_Contig17810
External Databases
Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index
TC301366
wEST map position
BF201217
NCBI UniGene
Ta.9331
DB Remark
Locus Source: Triticum aestivum (bread wheat) UniGene title 'Transcribed locus, strongly similar to NP_001056082.1 Os05g0522500 [Oryza sativa (japonica cultivar-group)]'
Keyword
EST
Germplasm
Chinese Spring
Species
Triticum aestivum
Cultivar
Chinese Spring
Chromosome
1DL
Clone Library
Wheat pre-anthesis spike cDNA library
Tissue
Spike before anthesis
Developmental Stage
Adult plant
Data Source
genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title
WHE0986_A11_B22ZS Wheat pre-anthesis spike cDNA library Triticum aestivum cDNA clone WHE0986_A11_B22, mRNA sequence.
Other Name
WHE0986_A11_B22ZS [ wEST-mySQL (obsolete) ]
Strain
lab_host E. coli SOLR
DNA Library
TA019E1X
Clone
WHE0986_A11_B22
Probe
BF201217 WHE0986_A11_B22
Remark
DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Whole spike with awns trimmed, white, green and yellow anther were collected and total RNA, and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology
Ta.9331.1.S1_at 858 WHE2AFFY Ta.9331.1.S1_x_at 858 WHE2AFFY Ta.10443.2.S1_at 161 WHE2AFFY Ta.10443.2.S1_at 153 WHE2AFFY
DNA
cacgcccacgccctgctgcggggcatctccgacgcgctcgtcctcgagat
ggagcgcggcctgcgcggggacatccactcccagctcaagatgctcatca
gctacgtcgaccagctccccaccggagacgaacatggcttgttttatgca
ttggatcttggaggtaccaacttccgtgttctgcgagtccaacttggagg
aagggagaaacgtgttgccaagcaacagtatcaggaagtctctattccac
cacacctgatggtcggaacttccttggaactatttgatttcattgcttct
gtattggccaaatttattgaaactgaaggtgacgagttccacctcccagt
ggggaggcagagagagctgggtttcaccttttcctttccggtaaaccaat
tatcaatatcatcaggaacactcatcaagtggacaaagggcttttcaatc
aacggcgcggttggtgaggatgttgtggctg
GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture.
GrainGenes Sequence Report: Ta.9331.1.S1_x_at
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GrainGenes is a product of the Agricultural Research Service of the US Department of Agriculture. | |||