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GrainGenes Sequence Report: BF292180

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Sequence	BF292180
Contig	NSFT03P2_Contig13634
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
wEST map position	BF292180
DB Remark	Locus Source: Aegilops speltoides
Keyword	EST
Species	Aegilops speltoides
Cultivar	F2 from 2-12-4-8-1-1-1-(1) x PI36909-12-811-(1 ) F2 from 2-12-4-8-1-1-1-(1) x PI36909-12-811-(1)
Chromosome	4AL 4DS
Clone Library	Aegilops speltoides anther cDNA library
Tissue	Anther
Developmental Stage	Premeiotic anthers
Data Source	genbank Release 135, Apr 15 2003 genbank Downloaded 2008-2009
Title	WHE2207_F02_L03ZS Aegilops speltoides anther cDNA library Aegilops speltoides cDNA clone WHE2207_F02_L03, mRNA sequence.
Other Name	WHE2207_F02_L03ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	AS040E1X
Clone	WHE2207_F02_L03
Probe	WHE2207_F02_L03
Remark	DB_xref: taxon:4573 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in a growth chamber at the University of California, Davis (Akhunov). Premeiotic anthers were harvested, total RNA and poly(A) RNA were prepared, from each tissue and then pooled, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons , Zhang) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in a growth chamber at the University of California, Davis (Akhunov). Premeiotic anthers were harvested, total RNA and poly(A) RNA were prepared, from each tissue and then pooled, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Akhunov, Chin, Choi, Close, Fenton, Kianian, Otto, Simons, Zhang) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.14557.1.S1_at 708 WHE2AFFY Ta.14557.1.S1_at 313 WHE2AFFY TaAffx.87844.1.S1_at 153 WHE2AFFY TaAffx.87844.1.S1_at 147 WHE2AFFY
DNA	tcccccaattacaacctctctcgccgtcttctcgctcgcccgtccgtccc ccaaatccaccccctccctcccccgcacgaacccccagcggcgtcgccgg cgatggagtgcgtcatcggcgtggtcggccgcgacttcgcggtggtggcg gcggacacgtccgccgtgcagagcatcctcgtccacaagacggacgagga caagatcatgctcctcgactcccacaagctcatgggcgcctccggcgagc ccggcgaccgcgtgcagttcaccgagttcatccagaagaacctccacctc taccagtttcgcaacaacatgccgctcagcaccgccgccaccgccaactt cacccgcggcgagctcgccaccgccctgcgcaagaatccctactctgtaa acatcatacttgcagggtttgataaagacgctggtgcatcgatgtcttac attgactacatcgcgacgcttcacaagatcgacaagggagcat

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