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GrainGenes Sequence Report: BF473016

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Sequence	BF473016
Contig	NSFT03P2_Contig18484
Tracefile	[ Download ] [ View ]
External Databases	Data at GenBank Data at EMBL Data at DDBJ
TIGR Gene Index	TC282220
wEST map position	BF473016
NCBI UniGene	Ta.24982
DB Remark	Locus Source: Triticum aestivum (bread wheat) UniGene title 'Aspartate aminotransferase'
Keyword	EST
Germplasm	Chinese Spring
Species	Triticum aestivum
Cultivar	Chinese Spring
Chromosome	3AL 3BS 3DS
Clone Library	Wheat 5-15 DAP spike cDNA library
Tissue	Spike
Developmental Stage	Adult plant
Data Source	genbank Release 135, Apr 15 2003 genbank Updated Nov 2006
Title	WHE0927_C03_F05ZS Wheat 5-15 DAP spike cDNA library Triticum aestivum cDNA clone WHE0927_C03_F05, mRNA sequence.
Other Name	WHE0927_C03_F05ZS  [ wEST-mySQL (obsolete) ]
Strain	lab_host E. coli SOLR
DNA Library	TA018E1X
Clone	WHE0927_C03_F05
Probe	WHE0927_C03_F05
Remark	DB_xref: taxon:4565 Feature: source: mol_type = 'mRNA'; Locus Comment: Contact: Olin Anderson; US Department of Agriculture, Agriculture Research Service, Pacific; West Area, Western Regional Research Center; 800 Buchanan Street, Albany, CA 94710, USA; Tel: 5105595773; Fax: 5105595818; Email: oandersn@pw.usda.gov; Sequence have been trimmed to remove vector sequence and low; quality sequence with phred score less than 20; Seq primer: Stratagene SK primer. Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors ). Note: Vector: Lambda Uni-ZAP XR, excised phagemid; Site_1: EcoRI; Site_2: XhoI; Plants were grown in the greenhouse. Spikes at 5, 10 and 15 DAP were harvested, total RNA and poly(A) RNA were prepared, a cDNA library was made, and the cDNA clones were in vivo excised to give pBluescript phagemids in the TJ Close lab (Choi, Close, Fenton) at the University of California, Riverside. Plasmid DNA preparations and DNA sequencing were performed in the OD Anderson lab (all other authors).
DNA Homology	Ta.24982.1.S1_at 1154 WHE2AFFY TaAffx.62770.1.S1_at 287 WHE2AFFY TaAffx.62770.1.S1_at 198 WHE2AFFY TaAffx.62693.1.S1_at 56 WHE2AFFY
DNA	ccctctgctgatgtggtcaggcgcgccgagcagatgctgatccaaaacga gtcacgtgttaaggagtacttgccgatcactggattggccgatttcaaca agttgagtgccaagcttatctttggtgctgacagtcctgctattcaggag aatagggtggctacagtgcagtgcttatcaggaactggttccttaagagt gggaggtgaatttcttgcaaggcactatcatgaacgcactatctacatcc cccagccaacctgggggaatcacccaaaagtgttcactttagctggcctg actgctaggagttaccggtactatgatcctgcaactcgtggactggattt ccaaggactcttagaagacatcagttcagctccctcaggcgcaattgtac tgcttcatgcatgtgcccacaaccctactggtgtcgacccaaccttggaa cagtgggaacagatcaggcagctgatgagatcaaaagcattgctgccatt ctttgacagtgcttatcaaggatttgcaagtggaagccttgacaaagatg cccaatcagtgcgcatgttcgtcgctgatggtggtgaattgctcatggct caaagctatgccaagaacatgggattgtatggagagcgtgttggtgcttt aagcatcgtttgtgggagtgctgatatagctgtt

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